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Translational Bioinformatics Group

Course: Mathematical methods in bioinformatics.

Lecture 1. Introduction. (lecture slides)

Lecture 2. Sequence alignment. (lecture slides)
           references: Durbin et al., papers.

Lecture 3. Hiden Markov Models. (lecture slides)
           references: Durbin et al., papers.

Lecture 4. Multiple sequence alignment. (lecture slides)
           references: Durbin et al.

Lecture 5. Profile HHM. (lecture slides)
           references: Durbin et al.

Lecture 6. Phylogenetic trees. (lecture slides)
           references: Durbin et al.

Lecture 7. DNA regulatory sites. (lecture slides)
           references: papers.

Lecture 8. Genome assembly. (lecture slides)
           references: papers.

Lecture 9. RNA secondary structure. (lecture slides)
           references: Durbin et al, papers.

References.

R. Durbin, S. Eddy, A. Krogh, G. Michison. Biological Sequence Analysis

Nature Biotechnoilogy Primers collection